External Data Transfer

You will often want to transfer data between the ASKAP Central Processor and computers at your home institution. For example, upon completion of imaging you may want to visualise those images on your desktop computer.

You may use the secure copy program (scp) to copy data to/from either your home directory or the scratch filesysyem. A special data-mover node exists, with hostname hpc-data.pawsey.org.au, for this purpose. It is possible to copy data through the login nodes, however this should be avoided so as to reduce the load on the login nodes. This data-mover node is actually a front-end to one of four nodes, and these can see both /scratch2 (on galaxy) and /scratch (on magnus).

Here is an example of copying a file from both the home directory and the scratch filesystem. Note these commands are executed on your local host (e.g. your desktop or laptop):

scp -r hpc-data.pawsey.org.au:/scratch2/askap/user123/image.fits .
scp -r hpc-data.pawsey.org.au:~/1934-638.ms .

or to copy from your laptop/desktop to the Central Processor:

scp -r image.fits hpc-data.pawsey.org.au:/scratch2/askap/user123
scp -r 1934-638.ms hpc-data.pawsey.org.au:~

Note the “-r” performs a recursive copy so can be used to copy files or directories.

Using BBCP

Using scp can be quite slow and a program called bbcp is suggested for large files.

The ASKAP software team can supply Debian packages. Usage is similar to scp, but with a few extra parameters. To copy a file from the /scratch2 filesystem:

bbcp -z -P 10 -s 32 -w 2M -r hpc-data1.pawsey.org.au:/scratch2/askap/user123/image.fits .

and to copy a file to the /scratch2 filesystem:

bbcp -P 10 -s 32 -w 2M -m 2755/644 -r image.fits hpc-data1.pawsey.org.au:/scratch2/askap/user123

Note

The hostname necessary to use bbcp is hpc-data1.pawsey.org.au. This is one of the four hosts to which the hpc-data DNS alias points to (the other that works is hpc-data2). This is necessary as bbcp doesn’t reliably establish connections via the galaxydata alias due to the fact connections are round-robined between its four nodes.

The three additional options result in production of progress messages every 10 seconds, sets the number of parallel network streams to be used for the transfer to 32, and sets the preferred size of the TCP window to 2MB. On some networks increasing the number of streams from 32 (up to a maximum of 64) may result in even higher throughput.

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